PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AT1G72210.1
Common NameBHLH96, EN15, T9N14.4
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family bHLH
Protein Properties Length: 320aa    MW: 35971.8 Da    PI: 5.1394
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AT1G72210.1genomeTAIRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH47.43.4e-15123174155
                  CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
          HLH   1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                  +r++h ++Er+RR+++N+ ++ Lr+l+P+    ++++ + a+i+  A++Y+k+L+
  AT1G72210.1 123 QRMTHIAVERNRRKQMNEYLAVLRSLMPPY---YAQRGDQASIVGGAINYLKELE 174
                  79***************************9...9******************996 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474593.66E-17121186IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.20E-13121178No hitNo description
PROSITE profilePS5088816.253122173IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.4E-13122178IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.1E-12123174IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.8E-10128179IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS516718.642244320IPR002912ACT domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0016597Molecular Functionamino acid binding
GO:0046983Molecular Functionprotein dimerization activity
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0000293anatomyguard cell
Sequence ? help Back to Top
Protein Sequence    Length: 320 aa     Download sequence    Send to blast
MALEAVVYPQ DPFSYISCKD FPFYDLYFQE EEDQDPQDTK NNIKLGQGQG HGFASNNYNG  60
RTGDYSDDYN YNEEDLQWPR DLPYGSAVDT ESQPPPSDVA AGGGRRKRRR TRSSKNKEEI  120
ENQRMTHIAV ERNRRKQMNE YLAVLRSLMP PYYAQRGDQA SIVGGAINYL KELEHHLQSM  180
EPPVKTATED TGAGHDQTKT TSASSSGPFS DFFAFPQYSN RPTSAAAAEG MAEIEVTMVE  240
SHASLKILAK KRPRQLLKLV SSIQSLRLTL LHLNVTTRDD SVLYSISVKV EEGSQLNTVE  300
DIAAAVNQIL RRIEEESSFS
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1105109RKRRR
2105110RKRRRT
3123134RMTHIAVERNRR
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO425631630.0
Expression AtlasAT1G72210-
AtGenExpressAT1G72210-
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed constitutively in roots, leaves, stems, and flowers. {ECO:0000269|PubMed:12679534}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapAT1G72210.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Phenotype -- Mutation ? help Back to Top
Source ID
T-DNA ExpressAT1G72210
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAJ4597710.0AJ459771.1 Arabidopsis thaliana mRNA for basic-helix-loop-helix transcription factor (bHLH096 gene).
GenBankBT0038710.0BT003871.1 Arabidopsis thaliana clone RAFL15-42-L08 (R20946) putative bHLH protein (At1g72210) mRNA, complete cds.
GenBankBT0060860.0BT006086.1 Arabidopsis thaliana clone U20946 putative bHLH protein (At1g72210) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_177366.10.0transcription factor bHLH96
SwissprotQ9C7T40.0BH096_ARATH; Transcription factor bHLH96
TrEMBLR0IFC40.0R0IFC4_9BRAS; Uncharacterized protein
STRINGAT1G72210.10.0(Arabidopsis thaliana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM111627102
Representative plantOGRP25315131
Publications ? help Back to Top
  1. Riechmann JL, et al.
    Arabidopsis transcription factors: genome-wide comparative analysis among eukaryotes.
    Science, 2000. 290(5499): p. 2105-10
    [PMID:11118137]
  2. van Leeuwen H,Monfort A,Zhang HB,Puigdom
    Identification and characterisation of a melon genomic region containing a resistance gene cluster from a constructed BAC library. Microcolinearity between Cucumis melo and Arabidopsis thaliana.
    Plant Mol. Biol., 2003. 51(5): p. 703-18
    [PMID:12678558]
  3. Heim MA, et al.
    The basic helix-loop-helix transcription factor family in plants: a genome-wide study of protein structure and functional diversity.
    Mol. Biol. Evol., 2003. 20(5): p. 735-47
    [PMID:12679534]
  4. Toledo-Ortiz G,Huq E,Quail PH
    The Arabidopsis basic/helix-loop-helix transcription factor family.
    Plant Cell, 2003. 15(8): p. 1749-70
    [PMID:12897250]
  5. Yamada K, et al.
    Empirical analysis of transcriptional activity in the Arabidopsis genome.
    Science, 2003. 302(5646): p. 842-6
    [PMID:14593172]
  6. Bailey PC, et al.
    Update on the basic helix-loop-helix transcription factor gene family in Arabidopsis thaliana.
    Plant Cell, 2003. 15(11): p. 2497-502
    [PMID:14600211]
  7. Efroni I, et al.
    Regulation of leaf maturation by chromatin-mediated modulation of cytokinin responses.
    Dev. Cell, 2013. 24(4): p. 438-45
    [PMID:23449474]